Publikace

@article{Berdonces-Layunta2024,

title = {The effect of water on gold supported chiral graphene nanoribbons: rupture of conjugation by an alternating hydrogenation pattern.},

author = {Berdonces-Layunta, Alejandro and Adam, Matěj and Jiménez-Martín, Alejandro and Lawrence, James and Mohammed, Mohammed S. G and Wang, Tao and Mallada, Benjamin and de la Torre, Bruno and Martínez, Adrian and Vilas-Varela, Manuel and Nieman, Reed and Lischka, Hans and Nachtigallová, Dana and Peña, Diego and Jelínek, Pavel and de Oteyza, Dimas},

doi = {10.1039/D3NR02933F},

year  = {2024},

date = {2024-10-02},

journal = {Nanoscale},

volume = {16},

pages = {734-741},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Lapčík2024b,

title = {The influence of surface properties on the cooperative behavior of powdered milks.},

author = {Lapčík, Lubomír and Lapčíková, Barbora and Vašina, Martin and Otyepková, Eva and Rancová, Alexandra and Salek, Nikolaos Richardos and Kvítek, Libor

},

doi = {10.3168/jds.2024-25439},

year  = {2024},

date = {2024-09-27},

journal = {J. Dairy Sci.},

volume = {ASAP},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Pyrshev2024,

title = {Ticagrelor increases its own potency at the P2Y12 receptor by directly changing the plasma membrane lipid order in platelets},

author = {Pyrshev, Kyrylo and Allemand, Florentin and Rabani, Vahideh and Yesylevskyy, Semen and Davani, Siamak and Ramseyer, Christophe and Lagoutte-Renosi, Jennifer},

doi = {10.1111/bph.16500},

year  = {2024},

date = {2024-07-22},

journal = {Br. J. Pharmacol.},

volume = {ASAP},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Kajábová2024,

title = {Electron traps as a valuable criterium of iron oxide catalysts' performance in CO2 hydrogenation.},

author = {Kajábová, Martina and Stryšovský, Tomáš and Bikbashev, Arkadii and Kovářová, Zuzana and Simkovičová, Karolína and Prucek, Robert and Panáček, Aleš and Novák, Petr and Kopp, Josef and Kašlík, Josef and Petr, Martin and Malara, Angela and Frontera, Patrizia and Takashima, Mai and Vajda, Štefan and Ohtani, Bunsho and Kvítek, Libor},

doi = {10.1016/j.jcou.2024.102863},

year  = {2024},

date = {2024-07-20},

journal = {J. CO2 Util},

volume = {85},

number = {102863},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Lamanec2024,

title = {Similarities and Differences of Hydridic and Protonic Hydrogen Bonding},

author = {Lamanec, Maximilian and Zienertova, Jitka and Špeťko, Matej and Nachtigallová, Dana and Hobza, Pavel},

doi = {10.1002/cphc.202400403},

year  = {2024},

date = {2024-07-18},

journal = {ChemPhysChem },

volume = {25},

issue = {17},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Hochvaldová2024,

title = {Implications of silver nanoparticles for H. pylori infection: modulation of CagA function and signaling.},

author = {Hochvaldová, Lucie and Posselt, Gernot and Wessler, Silja and Kvítek, Libor and Panáček, Aleš},

doi = {10.3389/fcimb.2024.1419568},

year  = {2024},

date = {2024-07-18},

journal = {Front. cell. infect. microbiol.},

volume = {14},

number = {1419568},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Sepetcioglu2024,

title = {Improved mechanical properties of graphene-modified basalt fibre-epoxy composites.},

author = {Sepetcioglu, Harun and Lapčík, Lubomír and Lapčíková, Barbora and Vašina, Martin and Hui, David and Ovsik, Martin and Staněk, Michal and Murtaja, Yousef and Kvítek, Libor and Lapčíková, Tereza and Zmeškal, Oldřich},

doi = {10.1515/ntrev-2024-0052},

year  = {2024},

date = {2024-07-16},

journal = {Nanotechnol. Rev.},

volume = {13},

number = {20240052},

issue = {1},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Neuwirth2024,

title = {Effect of technological processing and recipe formulation on the physico-chemical properties of ganaches and chocolate pralines.},

author = {Neuwirth, Vojtěch and Lapčíková, Barbora and Lapčík, Lubomír and Valenta, Tomáš and Mísková, Zuzana},

doi = {10.1016/j.jfoodeng.2024.112124},

year  = {2024},

date = {2024-06-12},

journal = {J. Food Eng.},

volume = {378},

number = {112124},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Odehnalová2024,

title = {Liposomal Copermeation Assay Reveals Unexpected Membrane Interactions of Commonly Prescribed Drugs.},

author = {Odehnalová, Klára and Balouch, Martin and Storchmannová, Kateřina and Petrová, Eliška and Konefal, Magdalena and Zadražil, Aleš and Berka, Karel and Brus, Jiří and Štěpánek, František},

doi = {10.1021/acs.molpharmaceut.3c00766},

year  = {2024},

date = {2024-06-09},

journal = {Mol. Pharm.},

volume = {21},

issue = {6},

pages = {2673-2683},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Gautam2024,

title = {Pharmacological Significance of Boraginaceae with Special Insights into Shikonin and Its Potential in the Food Industry.},

author = {Gautam, Shweta and Lapčík, Lubomír and Lapčíková, Barbora},

doi = {10.3390/foods13091350},

year  = {2024},

date = {2024-05-20},

journal = {Foods},

volume = {13},

number = {1350},

issue = {9},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{nokey,

title = {Plant-Based Emulsions as Dairy Cream Alternatives: Comparison of Viscoelastic Properties and Colloidal Stability of Various Model Products.},

author = {Lapčíková, Barbora and Lapčík, Lubomír and Valenta, Tomáš and Chvatíková, Marie},

doi = {10.3390/foods13081225},

year  = {2024},

date = {2024-05-10},

urldate = {2024-05-10},

journal = {Foods},

volume = {13},

number = {1225},

issue = {8},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Lapčík2024,

title = {Studies on Food Physical Characterization.},

author = {Lapčík, Lubomír},

doi = {10.3390/foods13101572},

year  = {2024},

date = {2024-05-01},

journal = {Foods},

volume = {13},

number = {1572},

issue = {10},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Boutanquoi2024,

title = {A novel fatty acid analogue triggers CD36-GPR120 interaction and exerts anti-inflammatory action in endotoxemia},

author = {Boutanquoi, Pierre-Marie and Khan, Amira Sayed and Cabeza, Lidia and Jantzen, Lucas and Gautier, Thomas and Yesylevskyy, Semen and Ramseyer, Christophe and Masson, David and Van Waes, Vincent and Hichami, Aziz and Khan, Naim Akhtar},

doi = {10.1007/s00018-024-05207-1},

year  = {2024},

date = {2024-04-26},

journal = {Cell. Mol. Life Sci.},

volume = {81},

number = {176},

issue = {1},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Jurečka2024,

title = {Multistate B- to A- transition in protein-DNA Binding - How well is it described by current AMBER force fields?},

author = {Jurečka, Petr and Zgarbová, Marie and Černý, Filip and Salomon, Jan},

doi = {10.1080/07391102.2024.2327539},

year  = {2024},

date = {2024-03-01},

journal = {J. Biomol. Struct. Dyn.},

volume = {ASAP},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Sarvalkar2024,

title = { Context Sensitive Links 1 of 1 Bio-inspired synthesis of biologically and catalytically active silver chloride-anchored Palladium/Gold/Silver Trimetallic nanoparticles.},

author = {Sarvalkar, Prashant D and Tibe, Arati P and Kamble, Suhas S and Karvekar, Omkar S and Teli, Shivanand B and Powar, Prathmesh S and Kurhe, Deepti N and Nimbalkar, Mansingraj S and Prasad, Neeraj R and Sharma, Kiran Kumar K},

doi = {10.1016/j.catcom.2024.106897},

year  = {2024},

date = {2024-02-07},

journal = {Catal. Commun.},

volume = {187},

number = {106897},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Pocklanová2024b,

title = {Nanodiamond Supported Ultra-Small Palladium Nanoparticles as an Efficient Catalyst for Suzuki Cross-Coupling Reactions.},

author = {Pocklanová, Radka and Warkad, Indrajeet R and Prucek, Robert and Balzerová, Anna and Panáček, Aleš and Kadam, Ravishankar G and Kvítek, Libor and Gawande, Manoj B},

doi = {10.3390/catal14010053},

year  = {2024},

date = {2024-02-05},

journal = {Catalyst},

volume = {14},

number = {53},

issue = {1},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Pocklanová2024,

title = {Nanodiamond Supported Ultra-Small Palladium Nanoparticles as an Efficient Catalyst for Suzuki Cross-Coupling Reactions. },

author = {Pocklanová, Radka and Warkad, Indrajeet R. and Prucek, Robert and Balzerová, Anna and Panáček, Aleš and Kadam, Ravishankar G. and Kvítek, Libor and Gawande, Manoj B.},

doi = {10.3390/catal14010053},

year  = {2024},

date = {2024-02-05},

journal = {Catalysts},

volume = {14},

number = {53},

issue = {1},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Frezza2024,

title = {On-Surface Synthesis of a Radical 2D Supramolecular Organic Framework.},

author = {Frezza, Federico and Matěj, Adam and Sanchez-Grande, Ana and Carrera, Manuel and Mutombo, Pingo and Kumar, Manish and Curiel, David and Jelínek, Pavel},

doi = {10.1021/jacs.3c13702},

year  = {2024},

date = {2024-01-25},

urldate = {2024-01-25},

journal = {J. Am. Chem. Soc.},

volume = {146},

issue = {5},

pages = {3531-3538},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Voitsitskyi2024,

title = {Augmenting a training dataset of the generative diffusion model for molecular docking with artificial binding pockets},

author = {Voitsitskyi, Taras and Bdzhola, Volodymyr and Stratiichuk, Roman and Koleiev, Ihor and Ostrovsky, Zakhar and Vozniak, Volodymyr and Khropachov, Ivan and Henitsoi, Pavlo and Popryho, Leonid and Zhytar, Roman and Nafiiev, Alan and Starosyla, Serhii},

doi = {10.1039/d3ra08147h},

year  = {2024},

date = {2024-01-12},

journal = {RSC Adv.},

volume = {14},

issue = {2},

pages = {1341-1353},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Špačková2023,

title = {ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era.},

author = {Špačková, Anna and Vávra, Ondřej and Raček, Tomáš, Bazgier, Václav and Sehnal, David and Damborský, Jiří and Svobodová, Radka and Bednář, David and Berka, Karel },

doi = {10.1093/nar/gkad1012},

year  = {2024},

date = {2024-01-01},

urldate = {2023-11-13},

journal = {Nucleic Acids Res.},

volume = {52},

number = {gkad1012},

issue = {D1},

pages = {D413–D418},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Chasák2023,

title = {Expanding the squaramide library as mycobacterial ATP synthase inhibitors: Innovative synthetic pathway and biological evaluation.},

author = {Chasák, Jan and Oorts, Lauren and Dak, Milan and Šlachtová, Veronika and Bazgier, Vaclav and Berka, Karel and De Vooght, Linda and Smiejkowska, Natalia and Van Calster, Kevin and Van Moll, Laurence and Cappoen, Davie and Cos, Paul and Brulíková, Lucie},

doi = {10.1016/j.bmc.2023.117504},

year  = {2023},

date = {2023-11-15},

journal = {Bioorg. Med. Chem.},

volume = {95},

number = {117504},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Majka2023,

title = {The chromatin determinants and Ph1 gene effect at wheat sites with contrasting recombination frequency.},

author = {Majka, Maciej and Janáková, Eva Jakobson, Irena and Jarve, Kadri and Cápal, Petr and Korchanová, Zuzana and Lampar, Adam and Juračka, Jakub and Valarik, Miroslav},

doi = {10.1016/j.jare.2023.01.002},

year  = {2023},

date = {2023-11-01},

journal = {J. Adv. Res.},

volume = {53},

number = {75-85},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Kadam2023,

title = {Cyclohexane Oxidative Dehydrogenation on Graphene-Oxide-Supported Cobalt Ferrite Nanohybrids: Effect of Dynamic Nature of Active Sites on Reaction Selectivity.},

author = {Kadam, Shashikant A. and Sandoval, Stefania and Bastl, Zdenek and Simkovičová, Karolína and Kvítek, Libor and Jašík, Juraj and Olszowka, Joanna Elzbieta and Valtera, Stanislav and Vaidulych, Mykhailo and Morávková, Jaroslava and Sazama, Petr and Kubička, David and Travert, Arnaud and van Bokhoven, Jeroen A. and Fortunelli, Alessandro and Kleibert, Armin and Kalbáč, Martin and Vajda, Štefan},

doi = {10.1021/acscatal.3c02592},

year  = {2023},

date = {2023-10-23},

journal = {ACS Catal.},

volume = {13},

issue = {20},

pages = {13484-13505},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Jiménez-Martín2023,

title = {On-surface synthesis of non-benzenoid conjugated polymers by selective atomic rearrangement of ethynylarenes.},

author = {Jiménez-Martín, Alejandro and Villalobos, Federico and Mallada, Benjamin and Edalatmanesh, Shayan and Matěj, Adam and Cuerva, Juan and Jelínek, Pavel and Campaña, Araceli and de la Torre, Bruno},

doi = {10.1039/D2SC04722E},

year  = {2023},

date = {2023-10-10},

journal = {Chem. Sci.},

volume = {14},

pages = {1403-1412},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Voňka2023,

title = {Small change-big consequence: The impact of C15-C16 double bond in a D-ring of estrone on estrogen receptor activity.},

author = {Voňka, Petr and Rárová, Lucie and Bazgier, Václav and Tichý, Vlastimil and Kolarova, Tamara and Holčáková, Jitka and Berka, Karel and Kvasnica, Miroslav and Oklešťková, Jana and Kudová, Eva and Strnad, Miroslav and Hrstka, Roman},

doi = {10.1016/j.jsbmb.2023.106365},

year  = {2023},

date = {2023-10-01},

journal = {J. Steroid Biochem. Mol. Biol. },

volume = {233},

number = {106365},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Coulon2023,

title = {Prebiotic Synthesis of 3',5'-Cyclic Adenosine and Guanosine Monophosphates through Carbodiimide-Assisted Cyclization.},

author = {Coulon, Remi and Papoušková, Barbora and Mohammadi, Elmira and Otyepka, Michal and Wunnava, Sreekar and Šponer, Jiří and Šponer, Judit E},

doi = {10.1002/cbic.202300510},

year  = {2023},

date = {2023-10-01},

journal = {CHEMBIOCHEM},

volume = {ASAP},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{nokey,

title = {Curcuma particle size evolution by application of bead milling process and curcuminoids content determination.},

author = {Lapčíková, Barbora and Valenta, Tomáš and Lapčík, Lubomír and Li, Peng},

doi = {10.1111/ijfs.16671},

year  = {2023},

date = {2023-09-11},

journal = {Int. J. Food Sci. Technol.},

volume = {ASAP},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Mallada2023,

title = {Visualization of π-hole in molecules by means of Kelvin probe force microscopy.},

author = {Mallada, Benjamin and Ondráček, M and Lamanec, Maximilián and Gallardo, A and Jimenez-Martin, A and de la Torre, Bruno and Hobza, Pavel and Jelínek, Pavel},

doi = {10.1038/s41467-023-40593-3},

year  = {2023},

date = {2023-07-22},

journal = {Nat. Commun.},

volume = {14},

number = {4954},

issue = {1},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Love2023,

title = {Assessing the Current State of Amber Force Field Modifications for DNA─2023 Edition.},

author = {Love, Olivia and Galindo-Murillo, Rodrigo and Zgarbová, Marie and Šponer, Jiří and Jurečka, Petr and Cheatham, I. I. I. Thomas E.},

doi = {10.1021/acs.jctc.3c00233},

year  = {2023},

date = {2023-06-07},

journal = {J. Chem. Theory Comput.},

volume = {19},

issue = {13},

pages = {4299-4307},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Chareshneu2023,

title = {Mol* Volumes and Segmentations: visualization and interpretation of cell imaging data alongside macromolecular structure data and biological annotations.},

author = {Chareshneu, Aliaksei and Midlík, Adam and Ionescu, Crina-Maria and Rose, Alexander and Horský, Vladimír and Cantara, Alessio and Svobodová, Radka and Berka, Karel and Sehnal, David},

doi = {10.1093/nar/gkad411},

year  = {2023},

date = {2023-06-05},

journal = {Nucleic Acids Res.},

volume = {51},

issue = {W1},

pages = {W326-W330},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Řepka2023,

title = {Application of Physical-Chemical Approaches for Encapsulation of Active Substances in Pharmaceutical and Food Industries.},

author = {Řepka, David and Kurillová, Antonia and Murtaja, Yousef and Lapčík, Lubomír},

doi = {10.3390/foods12112189},

year  = {2023},

date = {2023-05-30},

journal = {Foods},

volume = {12},

issue = {11},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Schindler2023,

title = {αCharges: partial atomic charges for AlphaFold structures in high quality. },

author = {Schindler, Ondřej and Berka, Karel and Cantara, Alessio and Křenek, Aleš and Tichý, Dominik and Raček, Tomáš and Svobodová, Radka},

doi = {10.1093/nar/gkad349},

year  = {2023},

date = {2023-05-01},

journal = {Nucleic Acids Res.},

volume = {51},

issue = {W1},

pages = {W11-W16},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Lapčík2023b,

title = {A Physicochemical Study of the Antioxidant Activity of Corn Silk Extracts.},

author = {Lapčík, Lubomír and Řepka, David and Lapčíková, Barbora and Sumczynski, Daniela and Gautam, Shweta and Li, Peng and Valenta, Tomáš},

doi = {10.3390/foods12112159},

year  = {2023},

date = {2023-05-01},

journal = {Foods},

volume = {12},

number = {2159},

issue = {11},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Civiš2023,

title = {Hydrogen Bonding with Hydridic Hydrogen-Experimental Low-Temperature IR and Computational Study: Is a Revised Definition of Hydrogen Bonding Appropriate?},

author = {Civiš, Svatopluk and Lamanec, Maximilian and Špirko, Vladimir and Kubišta, Jiří and Spet'ko, Matej and Hobza, Pavel},

doi = {10.1021/jacs.3c00802},

year  = {2023},

date = {2023-04-15},

journal = {J. Am. Chem. Soc.},

volume = {145},

issue = {15},

pages = {8550-8559},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Lawson2022,

title = {Metabolic interactions of benzodiazepines with oxycodone ex vivo and toxicity depending on usage patterns in an animal model},

author = {Lawson, Roland and Čechová, Petra and Zarrouk, Elies and Javellaud, James and Bazgier, Václav and Otyepka, Michal and Trouillas, Patrick and Picard, Nicolas and Marquet, Pierre and Saint-Marcoux, Franck and El Balkhi, Souleiman},

doi = {10.1111/bph.15765},

year  = {2023},

date = {2023-04-01},

urldate = {2022-01-26},

journal = {Br. J. Pharmacol.},

volume = {180},

issue = {7},

pages = {829-842},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Belhacova2023,

title = {The role of TiO2 photocatalyst in degradation of halogenated phenols: Experimental, DFT and antibacterial study.},

author = {Belhacova, Lenka and Supinkova, Tatana and Panáček, Aleš and Hochvaldová, Lucie and Prucek, Robert and Zouzelka, Radek and Rathouský, Jiří},

url = {10.1016/j.apcata.2023.119134},

doi = {10.1016/j.apcata.2023.119134},

year  = {2023},

date = {2023-03-28},

urldate = {2023-03-28},

journal = {Appl. Catal., A	},

volume = {656},

number = {119134},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Opustilová2023,

title = {Physico-Chemical Study of Curcumin and Its Application in O/W/O Multiple Emulsion},

author = {Opustilová, Kristýna and Lapčíková, Barbora and Lapčík, Lubomír and Gautam, Shweta and Valenta, Tomáš and Li, Peng},

year  = {2023},

date = {2023-03-25},

journal = {Foods},

volume = {12},

number = {1394},

issue = {7},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Balouch2023,

title = {Computational Prodrug Design Methodology for Liposome Formulability Enhancement of Small-Molecule APIs. },

author = {Balouch, Martin and Storchmannová. Kateřina and Štěpánek, František and Berka, Karel},

doi = {10.1021/acs.molpharmaceut.2c01078},

year  = {2023},

date = {2023-03-20},

journal = {Mol. Pharmaceutics},

volume = {ASAP},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Anwar2023,

title = {Upcycling natural Limestone waste for thermochemical energy storage by utilising tailored CaZrO3 nanoadditives.},

author = {Anwar, Rehan and Navrátil, Jan and Vijayaraghavan, Rajani K. and McNally, Patrick J. and Otyepka, Michal and Blonski, Piotr and Sofianos, M. Veronica},

doi = {10.1039/d2ma01083f},

year  = {2023},

date = {2023-03-01},

journal = {Mater. Adv.},

volume = {4},

issue = {8},

pages = {1905-1915},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Gautam2023,

title = {Emulsion-Based Coatings for Preservation of Meat and Related Products.},

author = {Gautam, Shweta and Lapčík, Lubomír and Lapčíková, Barbora and Robert Gál},

url = {https://www.mdpi.com/2304-8158/12/4/832},

doi = {10.3390/foods12040832},

year  = {2023},

date = {2023-02-15},

journal = {Foods },

volume = {12},

number = {832},

issue = {4},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Loubalová2023,

title = {Antibacterial study on nickel and copper dicarboxylate complexes.},

author = {Loubalová, Ivana and Zahradníková, Eva and Masaryk, Lukáš and Němec, Ivan and Hochvaldová, Lucie and Panáček, Aleš and Kvítek, Libor and Večeřová, Renata and Swiatkowski, Marcin and Kopel, Pavel},

year  = {2023},

date = {2023-01-24},

journal = {Inorg. Chim. Acta},

volume = {545},

number = {121273},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Lapčík2022c,

title = {Effect of rapeseed oil on the rheological, mechanical and thermal properties of plastic lubricants},

author = {Lapčík, Lubomír and Vašina, Martin and Lapčíková, Barbora and Bureček, Adam and Hružík, Lumír},

doi = {10.1007/s11043-020-09474-w},

year  = {2022},

date = {2022-12-01},

journal = {Mech. Time-Depend. Mater.	},

volume = {26},

pages = {33–47},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Dak2022,

title = {Novel heterocyclic hydroxamates as inhibitors of the mycobacterial zinc metalloprotease Zmp1 to probe its mechanism of function.},

author = {Milan Dak and Veronika Šlachtová and Marek Šebela and Václav Bazgier and Karel Berka and Natalia Smiejkowska and Lauren Oorts and Davie Cappoen and Lucie Brulíková},

url = {https://www.sciencedirect.com/science/article/pii/S0223523422007334#!},

doi = {10.1016/j.ejmech.2022.114831},

year  = {2022},

date = {2022-10-05},

journal = {Eur. J. Med. Chem.},

volume = {ASAP},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Lapčík2022b,

title = {Acoustic and mechanical testing of commercial cocoa powders},

author = {Lapčík, Lubomír and Lapčíková, Barbora and Gautam, Shweta and Vašina, Martin and Valenta, Tomáš and Řepka, David and Čépe, Klára and Rudolf, Ondřej},

doi = {10.1080/10942912.2022.2127760},

year  = {2022},

date = {2022-09-29},

urldate = {2022-09-29},

journal = {Int. J. Food Prop.	},

volume = {25},

issue = {1},

pages = { 2184–2197},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Midlik2022,

title = {OverProt: secondary structure consensus for protein families},

author = {Adam Midlik and Ivana Hutařová Vařeková and Jan Hutař and Aliaksei Chareshneu and Karel Berka and Radka Svobodová},

doi = {10.1093/bioinformatics/btac384},

year  = {2022},

date = {2022-07-15},

journal = {Bioinformatics},

volume = {38},

issue = {14},

pages = {3648-3650},

abstract = {Every protein family has a set of characteristic secondary structures. However, due to individual variations, a single structure is not enough to represent the whole family. OverProt can create a secondary structure consensus, showing the general fold of the family as well as its variation. Our server provides precomputed results for all CATH superfamilies and user-defined computations, visualized by an interactive viewer, which shows the secondary structure element type, length, frequency of occurrence, spatial variability and β-connectivity.

Availability and implementation

OverProt Server is freely available at https://overprot.ncbr.muni.cz},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Simkovičová2022,

title = {Hydrogenation of CO2 on Nanostructured Cu/FeOx Catalysts: The Effect of Morphology and Cu Load on Selectivity},

author = {Karolína Simkovičová and Muhammad I. Qadir and Naděžda Žilková and Joanna E. Olszówka and Pavel Sialini and Libor Kvítek and Štefan Vajda},

url = {https://www.mdpi.com/2073-4344/12/5/516/htm},

doi = {10.3390/catal12050516},

year  = {2022},

date = {2022-05-04},

journal = {Catalysts },

volume = {12},

number = {516},

issue = {5},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Murtaja2022b,

title = {Intelligent high-tech coating of natural biopolymer layers.},

author = {Murtaja, Yousef and Lubomír Jr. Lapčík and Lapčíková, Barbora and Gautam, Shweta and Vašina, Martin and Spanhel, Lubomír and Vlček, Jakub},

doi = {10.1016/j.cis.2022.102681},

year  = {2022},

date = {2022-04-22},

journal = {Adv. Colloid Interface Sci.},

volume = {ASAP},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Annadurai2022,

title = {Antitumour drugs targeting tau R3 VQIVYK and Cys322 prevent seeding of endogenous tau aggregates by exogenous seeds},

author = {Narendran Annadurai and Lukáš Malina and Mario Salmona and Luisa Diomede and Antonio Bastone and Alfredo Cagnotto and Margherita Romeo and Martin Šrejber and Karel Berka and Michal Otyepka and Marián Hajdúch and Viswanath Das},

doi = {10.1111/febs.16270},

year  = {2022},

date = {2022-04-01},

journal = {The FEBS journal},

volume = {289},

issue = {7},

pages = {1929-1949},

abstract = {Emerging experimental evidence suggests tau pathology spreads between neuroanatomically connected brain regions in a prion‐like manner in Alzheimer's disease (AD). Tau seeding, the ability of prion‐like tau to recruit and misfold naïve tau to generate new seeds, is detected early in human AD brains before the development of major tau pathology. Many antitumour drugs have been reported to confer protection against neurodegeneration, supporting the repurposing of approved and experimental or investigational oncology drugs for AD therapy. In this study, we evaluated whether antitumour drugs that abrogate the generation of seed‐competent aggregates of tau Repeat 3 (R3) domain peptides can prevent tau seeding and toxicity in Tau‐RD P301S FRET Biosensor cells and Caenorhabditis elegans. We demonstrate that drugs that interact with the N-terminal VQIVYK or the C-terminal region housing the Cys322 prevent R3 dimerisation, abolishing the generation of prion-like R3 seeds. Preformed R3 seeds (fibrils) capped with, or R3 seeds formed in the presence of VQIVYK- or Cys322-targeting drugs have a reduced potency to cause aggregation of naïve tau in biosensor cells and protect worms from aggregate toxicity. These findings indicate that VQIVYK- or Cys322-targeting drugs may act as prophylactic agents against tau seeding.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}